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Urgent: Incompatibility with numpy >2.0.0 due to nptyping 2.5.0

Status: Open.

#370 In krishnanlab/PecanPy;

· seoanezonjic opened on Apr 17, 2026

fatal error, neighbor not found - even when graph contains neighbors

Status: Open.

#367 In krishnanlab/PecanPy;

· amjass12 opened on Sep 30, 2025

OMP method being used is now deprecated

Status: Open.

#345 In krishnanlab/PecanPy;

· kmanpearl opened on Mar 6, 2025

Adding Installation instruction into PecanPy documentation Website

documentationImprovements or additions to documentationImprovements or additions to documentation

Priority high

Status: Open.

#234 In krishnanlab/PecanPy;

· SakaizaRajery opened on Mar 22, 2023

Graph check after loading from npz

Status: Open.

#126 In krishnanlab/PecanPy;

· RemyLau opened on Jul 1, 2022

csr_matrices

enhancementNew feature or requestNew feature or request

Status: Open.

#122 In krishnanlab/PecanPy;

· kwchurch opened on Jun 28, 2022

Investigate gensim word2vec speedup over different architectures using different methods

Status: Open.

#119 In krishnanlab/PecanPy;

· RemyLau opened on Jun 20, 2022

Seed random number generators

help wantedExtra attention is neededExtra attention is needed

Status: Open.

#70 In krishnanlab/PecanPy;

· eric-czech opened on Feb 11, 2022

Node2vec+ on directed graphs

enhancementNew feature or requestNew feature or request

Status: Open.

#67 In krishnanlab/PecanPy;

· RemyLau opened on Feb 4, 2022

Use float32 for DenseOTF

Status: Open.

#59 In krishnanlab/PecanPy;

· RemyLau opened on Jan 9, 2022

Test transition probability computation

Status: Open.

#41 In krishnanlab/PecanPy;

· RemyLau opened on Nov 29, 2021

Performance tests

Status: Open.

#37 In krishnanlab/PecanPy;

· RemyLau opened on Nov 1, 2021