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Error in anti-join when user provides a sampleIDcol that is not IID but there is also an IID column in the file

Status: Open.

#54 In Atkinson-Lab/Tractor;

· jtb324 opened on Jan 28, 2026

Issue: There is no warning or failure when the input VCF to extract_tracts.py is empty

Status: Open.

#52 In Atkinson-Lab/Tractor;

· jtb324 opened on Jan 21, 2026

Inflated lambda values

Status: Open.

#51 In Atkinson-Lab/Tractor;

· GabrielCabas opened on Jan 16, 2026

Question about what happens if hapcount/dosage files contain people who are not in your phenotype file

Status: Open.

#50 In Atkinson-Lab/Tractor;

· jtb324 opened on Nov 20, 2025

Unexpectedly high thread count / CPU usage

Status: Open.

#46 In Atkinson-Lab/Tractor;

· pettyalex opened on Apr 1, 2025

run_tractor.R: Option to output ancestry allele frequencies by group

Status: Open.

#43 In Atkinson-Lab/Tractor;

· la-mendicino opened on Nov 13, 2024

FLARE: Recovering Haplotypes Disrupted by Statistical Phasing

Status: Open.

#42 In Atkinson-Lab/Tractor;

· la-mendicino opened on Oct 28, 2024